SCelVis¶
SCelVis is a web-based visualization tool for single-cell sequencing data.
Getting Started¶
- you can find the publically available web app at https://scelvis-demo.bihealth.org.
- to get started with your analysis, watch the Movie or follow the Analysis Tutorial.
- to learn how to get your own data into SCelVis, read about Source Format Details.
- if you are a bioinformatician and interested in running your own SCelVis server, read the Command Line Tutorial.
Running on your Computer¶
The recommended way to run SCelVis is using Docker:
$ docker run quay.io/biocontainers/scelvis:TAG scelvis --help
$ docker run -p 8050:8050 -v data:/data quay.io/biocontainers/scelvis:TAG scelvis run --data-source /data
In the above, replace TAG with the latest version that you can find on the corresponding Quay.io project.
For example, use 0.7.3--py_0.
Alternatively, you can install it using pip …
$ pip install scelvis
$ scelvis run --data-source ./data
… or using Bioconda:
$ conda install scelvis
$ scelvis run --data-source ./data