SCelVis is a web-based visualization tool for single-cell sequencing data.

Getting Started

Running on your Computer

The recommended way to run SCelVis is using Docker:

$ docker run scelvis --help
$ docker run -p 8050:8050 -v data:/data scelvis run --data-source /data

In the above, replace TAG with the latest version that you can find on the corresponding project. For example, use 0.7.3--py_0.

Alternatively, you can install it using pip

$ pip install scelvis
$ scelvis run --data-source ./data

… or using Bioconda:

$ conda install scelvis
$ scelvis run --data-source ./data

Indices and tables